RnoALTA0014376-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000009245 | Exosc2
Description
exosome component 2 [Source:RGD Symbol;Acc:1306573]
Coordinates
chr3:10154632-10156481:-
Coord C1 exon
chr3:10156413-10156481
Coord A exon
chr3:10154805-10154808
Coord C2 exon
chr3:10154632-10154804
Length
4 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
CTGATGGTCTGTCTCTTTAGCTA
3' ss Score
7.39
Exon sequences
Seq C1 exon
GCGGAAGTCCAGGCTGTGTTCTCCGATGGAGCTGTTTCTCTGCACACGAGGAGCCTGAAGTACGGAAAG
Seq A exon
CTAG
Seq C2 exon
GTCAGGGGGCTTTAGTCCAGGTCTCTCCTGCCCTGGTGAAAAGACAGAAGACCCATTTCCATGACTTGCCATGCGGTGCCTCAGTGATTCTGGGTAACAATGGTTTCATCTGGATCTACCCGACACCCGAGCACAAGGACGAGGAGGCAGGGGGCTTCATTGCCAACCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009245-11-9,11-8-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTCCAGGCTGTGTTCTCC
R:
TTTTCACCAGGGCAGGAGAGA
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]