HsaALTA0003049-4/5 @ hg38
Alternative 3'ss
Gene
ENSG00000130713 | EXOSC2
Description
exosome component 2 [Source:HGNC Symbol;Acc:HGNC:17097]
Coordinates
chr9:130700867-130702293:+
Coord C1 exon
chr9:130700867-130700935
Coord A exon
chr9:130702134-130702157
Coord C2 exon
chr9:130702158-130702293
Length
24 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TTCGTGATATATTTCTTTAGCTA
3' ss Score
5.57
Exon sequences
Seq C1 exon
GCTGAGGTCCAGGCAGTGTTCTCTGACGGAGCTGTCTCTTTGCACACGAGGAGCCTGAAATATGGAAAA
Seq A exon
CTAGGTCAGGGGGTTTTGGTCCAG
Seq C2 exon
GTTTCCCCCTCCCTGGTGAAACGGCAGAAGACCCACTTTCATGATTTGCCATGTGGTGCCTCAGTGATTCTCGGTAACAACGGCTTCATCTGGATTTACCCAACACCTGAGCACAAAGAAGAGGAAGCAGGGGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130713-12-15,12-14,12-13,12-12,12-11-4/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.018
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTCTCTTTGCACACGAG
R:
CGAGAATCACTGAGGCACCAC
Band lengths:
113-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains