BtaALTA0012038-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000020313 | FNBP1
Description
Bos taurus formin binding protein 1 (FNBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001206712]
Coordinates
chr11:100295449-100296028:-
Coord C1 exon
chr11:100295907-100296028
Coord A exon
NA
Coord C2 exon
chr11:100295449-100295585
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
TGTTTTGCTTTCTTGAGCAGCCC
3' ss Score
6.72
Exon sequences
Seq C1 exon
GCCTGGCTGGCCGAGGTGGAAGGCCGACTCCCAGCCCGCAGCGACCAGGCCCGTCGGCAGAGTGGGATGTACGAGGCGCAGAACGCCCCCTCCGTCAACAACTGCGCGCAGGATCGGGAGAG
Seq A exon
NA
Seq C2 exon
CCCCGATGGCAGTTACACAGAGGAGCAGAGTCAGGAGAGTGAGGTCAAGGTGCTGGCCACAGACTTTGATGACGAGTTTGACGACGAGGAGCCTCTTCCTGCCATAGGGACATGTAAAGCCCTCTACACGTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020313-22-25,22-24-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.797 A=NA C2=0.736
Domain overlap (PFAM):
C1:
PF154561=Uds1=PD(10.2=22.0),PF0218511=HR1=PD(6.1=9.8)
A:
NA
C2:
PF146041=SH3_9=PU(11.8=12.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGTACGAGGCGCAGAAC
R:
ACCTCACTCTCCTGACTCTGC
Band lengths:
103-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development