MmuALTA1042551-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000075415 | Fnbp1
Description
formin binding protein 1 [Source:MGI Symbol;Acc:MGI:109606]
Coordinates
chr2:31036118-31036663:-
Coord C1 exon
chr2:31036542-31036663
Coord A exon
chr2:31036250-31036254
Coord C2 exon
chr2:31036118-31036249
Length
5 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
TGTCTTCCTCTCTTGAGCAGCCC
3' ss Score
7.07
Exon sequences
Seq C1 exon
GCCTGGCTGGCTGAGGTAGAAGGCAGACTCCCAGCTCGGAGTGAGCAGGCACGCCGGCAGAGTGGACTGTATGATGGCCAGACACACCAGACGGTCACTAACTGTGCCCAGGACCGGGAGAG
Seq A exon
CCCAG
Seq C2 exon
ATGGTAGTTACACAGAGGAGCAAAGCCAGGAGAGCGAGCACAAGGTCCTGGCCCCGGATTTCGACGATGAATTTGATGATGAGGAGCCGCTTCCAGCCATAGGGACCTGCAAGGCCCTCTACACATTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075415-62-53,62-52,62-51-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.779 A=NA C2=0.789
Domain overlap (PFAM):
C1:
PF143891=Lzipper-MIP1=PD(10.8=22.0),PF154561=Uds1=PD(12.3=24.4),PF0218511=HR1=PD(0.1=0.0)
A:
NA
C2:
PF0001823=SH3_1=PU(14.6=14.9)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACTAACTGTGCCCAGGAC
R:
ATTCATCGTCGAAATCCGGGG
Band lengths:
101-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types