BtaALTA0014305-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000013162 | HSPA8
Description
Bos taurus heat shock 70kDa protein 8 (HSPA8), mRNA. [Source:RefSeq mRNA;Acc:NM_174345]
Coordinates
chr15:34219708-34220705:-
Coord C1 exon
chr15:34220636-34220705
Coord A exon
chr15:34219847-34219917
Coord C2 exon
chr15:34219708-34219846
Length
71 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
CCCCTTTTTTCCGCCTTTAGCAA
3' ss Score
9
Exon sequences
Seq C1 exon
GGTCTCATTGGACGCACCGGCAGCATTCCAGGTTGCTGACTCTTTCAGCAGAGCCGGGCCTACGCTTTTG
Seq A exon
CAACCATGTCTAAAGGACCTGCAGTTGGCATTGATCTTGGCACCACCTATTCTTGTGTGGGTGTCTTCCAG
Seq C2 exon
CACGGAAAGGTGGAAATAATTGCCAATGATCAGGGGAACCGAACCACCCCAAGCTATGTCGCCTTTACTGATACCGAACGGTTAATCGGTGATGCAGCAAAGAACCAAGTCGCAATGAATCCCACCAACACGGTTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013162-3-1,3-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.058
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0001215=HSP70=PU(10.4=91.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCATTCCAGGTTGCTGACT
R:
TGTTGGTGGGATTCATTGCGA
Band lengths:
180-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development