DreALTA0013997-3/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000012381 | hsc70
Description
heat shock cognate 70 [Source:ZFIN;Acc:ZDB-GENE-040426-1221]
Coordinates
chr15:37944253-37949384:-
Coord C1 exon
chr15:37949270-37949384
Coord A exon
chr15:37944312-37944462
Coord C2 exon
chr15:37944253-37944311
Length
151 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
ATTGGTCATTTTGTATCCAGACA
3' ss Score
5.17
Exon sequences
Seq C1 exon
GCTTCTGCCTCTGAGTCCGGCAGCGCAGGAGTGCAACAGGCACCAGGACGAGCTGAGGGGGCGAAAAGACATTCATTACAATCCGTTATCTCTCAGGAAGAACTTTTACATTAAG
Seq A exon
ACAGGATGTCAAAAGGTCCAGCAGTGGGTATTGATCTGGGCACCACCTACTCATGTGTGGGAATCTTCCAGCATGGAAAGGTGGAGATCATCGCCAATGACCAGGGAAACAGAACGACCCCCAGCTACGTCGCTTTCACGGACACCGAAAG
Seq C2 exon
ACTGATCGGAGATGCAGCCAAGAACCAAGTTGCCATGAACCCTTCTAACACTGTGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012381-0-3,0-2,0-1-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.058
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0001215=HSP70=PU(10.4=91.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTGCCTCTGAGTCCGGC
R:
ACACAGTGTTAGAAGGGTTCATGG
Band lengths:
170-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]