GgaALTA1016035-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000006512 | HSPA8
Description
heat shock cognate 71 kDa protein [Source:RefSeq peptide;Acc:NP_990334]
Coordinates
chr24:3069116-3070234:+
Coord C1 exon
chr24:3069116-3069426
Coord A exon
chr24:3070175-3070179
Coord C2 exon
chr24:3070180-3070234
Length
5 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTG
5' ss Score
8.35
3' ss Seq
TTTTCACTTTTTTTTTCCAGACA
3' ss Score
9.95
Exon sequences
Seq C1 exon
GGGGGGCGAGTCGAGAGGTTTAGGGGGGGCGAAGGGGAAAGCGCATGAAGGTTCGAGAATACCGGCCGGCCGGCAGCCACACCCCCTTTCCGCTACGTCACTGACGGTGCGTGTTCCGGTAGCCTACCATTGGCTGGAAGGGCTGTGGAAGGAGCGAACGGATTGGCTGGAGCCGAGAGAAGGGGCGGGCGCTTCTGGAAGGTTCTGAAGGGATATATAAAGGCGCCGGGGCGGGAGCGGACCGCTCTCATTCAGCAGCACTCTACCAGCAGCATTCTTTGTGCGCGTCTGCCGCTGCCCGCGCCGCTCAG
Seq A exon
ACAAG
Seq C2 exon
ATGTCAAAGGGACCAGCTGTTGGTATCGATCTTGGAACCACCTATTCCTGTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006512-3-1,3-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.072
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0001215=HSP70=PU(10.4=91.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTCTCATTCAGCAGCACTC
R:
CCAACAGCTGGTCCCTTTGAC
Band lengths:
92-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]