BtaALTA0015482-3/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000019277 | KCNH3
Description
potassium channel, voltage gated eag related subfamily H, member 3 [Source:HGNC Symbol;Acc:HGNC:6252]
Coordinates
chr5:30461275-30463019:-
Coord C1 exon
chr5:30462944-30463019
Coord A exon
chr5:30461339-30461508
Coord C2 exon
chr5:30461275-30461338
Length
170 bp
Sequences
Splice sites
5' ss Seq
CGCGTGAGT
5' ss Score
8.4
3' ss Seq
TGAGAGGTGCTCTCTTGCAGATA
3' ss Score
6.93
Exon sequences
Seq C1 exon
ATGCCGGCCATGCGGGGACTCCTGGCGCCGCAGAACACCTTCCTGGACACCATCGCCACGCGCTTCGACGGCACGC
Seq A exon
ATAGTAACTTCGTGCTGGGCAACGCCCAGGTGGCGGGGCTCTTCCCCGTGGTCTACTGCTCTGATGGCTTCTGTGACCTCACGGGTTTCTCCCGGGCCGAGGTCATGCAGCGGGGCTGCGCCTGCTCCTTCCTCTATGGGCCAGACACAAGTGAGCTCGTCCGCCAACAG
Seq C2 exon
ATCCGCAAGGCCCTGGATGAGCACAAGGAGTTCAAGGCTGAGCTGATCCTGTACCGGAAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019277-0-3,0-2,0-1-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=NA C2=0.013
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134261=PAS_9=PU(70.1=94.9),PF051168=S6PP=PU(60.7=68.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGCGGGGACTCCTGG
R:
TCTTCCGGTACAGGATCAGCT
Band lengths:
130-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development