DreALTA0014923-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000069560 | kcnh3
Description
potassium voltage-gated channel, subfamily H (eag-related), member 3 [Source:ZFIN;Acc:ZDB-GENE-070912-23]
Coordinates
chr9:28172080-28292351:-
Coord C1 exon
chr9:28292276-28292351
Coord A exon
chr9:28172310-28172313
Coord C2 exon
chr9:28172080-28172309
Length
4 bp
Sequences
Splice sites
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
3' ss Seq
TTTTTGTTTTTCTCTCACAGACA
3' ss Score
11.94
Exon sequences
Seq C1 exon
ATGCCTGTGATGAGAGGTCTGCTGGCCCCGCAGAACACCTTCCTCGACACCATCGCCACCCGTTTCGATGGCACCC
Seq A exon
ACAG
Seq C2 exon
TAACTTTGTGTTGGGGAACGCGCAAGTCCAGTCTCTCTACCCCATCGTTTACTGTTCTGATGGCTTCTGTGAGCTCACTGGTTATGCCCGTGCAGAGCTGATGCAGAAGAGCTGTGCATGTCATTTCCTCTATGGGCCGGAGACCAGTGACAGGCTGATGGCACAGATCCAGGGTGCACTGGACGAGAGGAGGGAGTTCAAGACAGAACTGGTCTTCTACAAAAAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069560-1-1,1-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.013
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134261=PAS_9=PU(69.8=93.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACACCTTCCTCGACACCA
R:
ACGATGGGGTAGAGAGACTGG
Band lengths:
93-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]