HsaALTA1027216-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000135519 | KCNH3
Description
potassium voltage-gated channel subfamily H member 3 [Source:HGNC Symbol;Acc:HGNC:6252]
Coordinates
chr12:49539157-49541132:+
Coord C1 exon
chr12:49539157-49539492
Coord A exon
chr12:49540899-49541068
Coord C2 exon
chr12:49541069-49541132
Length
170 bp
Sequences
Splice sites
5' ss Seq
CGCGTGAGT
5' ss Score
8.4
3' ss Seq
TGAGAAGTGCTCTCTTGCAGACA
3' ss Score
5.53
Exon sequences
Seq C1 exon
GGCCGCGGGGCCTGGAGCCCGGGATTTGTGGGCGGCGAGGGCGCGAGGGGCCGCGCGCCATGCTCCGGGCCCCGACGGCGCGGACGCCCCCTCGCGCGCCAGCGTCCGGCGCGACCCCGGATCCCGGTCTGCGCATTGCCCCCCGACGGCTGCGCTAGGGAGCGCGGGGCCCGGCGGGGGGCGGCCGAGCTGGGCGCCCTCCCCCGGCGCGGAGTCCCCGCACCCCGGAGGGATGGGGCGGGCAGCCGCGGGCGCCTAAGATGCCGGCCATGCGGGGCCTCCTGGCGCCGCAGAACACCTTCCTGGACACCATCGCTACGCGCTTCGACGGCACGC
Seq A exon
ACAGTAACTTCGTGCTGGGCAACGCCCAGGTGGCGGGGCTCTTCCCCGTGGTCTACTGCTCTGATGGCTTCTGTGACCTCACGGGCTTCTCCCGGGCTGAGGTCATGCAGCGGGGCTGTGCCTGCTCCTTCCTTTATGGGCCAGACACCAGTGAGCTCGTCCGCCAACAG
Seq C2 exon
ATCCGCAAGGCCCTGGACGAGCACAAGGAGTTCAAGGCTGAGCTGATCCTGTACCGGAAGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135519-0-2,0-1,0-0-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.009
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134261=PAS_9=PU(70.4=96.2),PF051168=S6PP=PU(61.5=70.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCCGGTCTGCGCATTG
R:
GAACTCCTTGTGCTCGTCCAG
Band lengths:
250-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains