BtaALTA0015483-3/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000019277 | KCNH3
Description
potassium channel, voltage gated eag related subfamily H, member 3 [Source:HGNC Symbol;Acc:HGNC:6252]
Coordinates
chr5:30445455-30446199:-
Coord C1 exon
chr5:30446093-30446199
Coord A exon
chr5:30445493-30445830
Coord C2 exon
chr5:30445455-30445492
Length
338 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTA
5' ss Score
7.64
3' ss Seq
AATGTTGTTAAAACCCTTAGAAG
3' ss Score
2.41
Exon sequences
Seq C1 exon
GGTCGTAGATGGGATTGAGGACGGCTGTGGCTCCGACCAGCCCCAGTTCTCCTTCCGTGTGAGGCAGTCTGGCCCGGAATGTAGCAGCAGCCCTTCTCCTGGACCAG
Seq A exon
AAGTGTCTGGCCCACTGCGGGAGATACAGGGCTGGGGAAGCAGAGTTGAAAATGACCACCGGGCAGGCCCGGCAGCCCTCAGAGTGTCCCCTAGCCTGGAAGACAGAACAAGAGACAATCACGAAGGCAGCTTCCCAAGGGGGAAGCCCGAGTCAGTGTGCCCGAGGCTCCCTGGCGGTTTGCACTGGATTCAGCAACTCGGGCAAGGTTACAAATGGCTGCTCCTGGCGGCAGGCCTGGCCAGGCCAGTGTGGTCTGTGCTCACCAGGCAGAGGCCTGGACCCCGCGCTATCTTCATTGACCAGCCCTGGCTGGTAACCCCTTCCTACTGTCCACAG
Seq C2 exon
AGAACGGCCTGCTCACTGTCCCCCTTGGGCCCAGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019277-16-22,16-21,16-20-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.946 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development