BtaINT0079566 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019277 | KCNH3
Description
potassium channel, voltage gated eag related subfamily H, member 3 [Source:HGNC Symbol;Acc:HGNC:6252]
Coordinates
chr5:30445416-30446199:-
Coord C1 exon
chr5:30446093-30446199
Coord A exon
chr5:30445493-30446092
Coord C2 exon
chr5:30445416-30445492
Length
600 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTA
5' ss Score
7.64
3' ss Seq
CCCCTTCCTACTGTCCACAGAGA
3' ss Score
9.92
Exon sequences
Seq C1 exon
GGTCGTAGATGGGATTGAGGACGGCTGTGGCTCCGACCAGCCCCAGTTCTCCTTCCGTGTGAGGCAGTCTGGCCCGGAATGTAGCAGCAGCCCTTCTCCTGGACCAG
Seq A exon
GTACTAGGGCTCAGTCCGTGGGGAGGCTGGCAGAGCAGGCCCCTTGCCCTGGGGGCCTCTGAGAAACTGGCAGGGCACAGACTTTGGATGCCTTCTTGCCCTCATCCATCTGCATGGTTTGGGCGGGGGAGTTTGGTGGGTAACACCAGCACCTTGGTGTTGGAAGGTAGCTGAAATGGAGCTTAGATCTCTGCTGCCAGCTTCCTATCTGTAAAAAGGTGGTTGTGCATGTTAAATGAGATAATGTTGTTAAAACCCTTAGAAGTGTCTGGCCCACTGCGGGAGATACAGGGCTGGGGAAGCAGAGTTGAAAATGACCACCGGGCAGGCCCGGCAGCCCTCAGAGTGTCCCCTAGCCTGGAAGACAGAACAAGAGACAATCACGAAGGCAGCTTCCCAAGGGGGAAGCCCGAGTCAGTGTGCCCGAGGCTCCCTGGCGGTTTGCACTGGATTCAGCAACTCGGGCAAGGTTACAAATGGCTGCTCCTGGCGGCAGGCCTGGCCAGGCCAGTGTGGTCTGTGCTCACCAGGCAGAGGCCTGGACCCCGCGCTATCTTCATTGACCAGCCCTGGCTGGTAACCCCTTCCTACTGTCCACAG
Seq C2 exon
AGAACGGCCTGCTCACTGTCCCCCTTGGGCCCAGCGAGGTGAGGAACACAGACACGCTGGACAAGCTTCGGCAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019277:ENSBTAT00000025668:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.946 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCGTAGATGGGATTGAGGAC
R:
CCTGCCGAAGCTTGTCCAG
Band lengths:
182-782
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]