RnoINT0077740 @ rn6
Intron Retention
Gene
ENSRNOG00000057315 | Kcnh3
Description
potassium voltage-gated channel subfamily H member 3 [Source:RGD Symbol;Acc:71070]
Coordinates
chr7:140908539-140909435:+
Coord C1 exon
chr7:140908539-140908645
Coord A exon
chr7:140908646-140909358
Coord C2 exon
chr7:140909359-140909435
Length
713 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTA
5' ss Score
7.26
3' ss Seq
TAATCTCGTCCTTTCCACAGAGA
3' ss Score
8.31
Exon sequences
Seq C1 exon
GGTCGTAGATGGCATTGAGGATGGCTGCGGCTCTGACCAGCACAAGTTCTCTTTCCGGGTGGGTCAGTCTGGCCCAGAATGTAGCAGCAGCCCCTCCCCAGGAACAG
Seq A exon
GTATTAGGTGTGGGGACAGGGAATGTTGGTGGGCACCCCATTTGCCTCATAGACGTCAAGCAGTGTGGTATCTGAGGAACCATAGAAGCCTCCCAGGCTGCTGGTGATGACTGGTATGGAGGTTTGGGTAACTGCCTGGTCAGCTTTTGAACAGCGTAAACTTGGCACCTTGGTCCTGCCTCCGGTCTATAAAATGGGTTGTTGTGCATGTTAAATGAGTATATACCTGACACTCTTGGCACATGTCTGCCTGTCTGGGAGACAGAGGGCTGGAAAGACTGAACTGAACCTGGCGCTGAATGAGACAGGTGGCCTGGAAAGGGGACATAATCTAGGACAGGATGAGGGACAGATATAAAGAGCGGCTTGCAGCTAGATGGTGGCATTTGCCTGTAATCCCAGCACTAGGGAGGTGGAGGTGGACAGAGCTCAGGGCTCAATAGCCTTGGCTATTCACACTTGAGGGAACATCATGGGCTATGAGACTTTCTCATCCTGCCCCACAAAGGGACAACGTCCTGCAGGGAGGAAAGCAGTAGACAGTATTACTCAGGGCTTCTGGGAGGGTTTCTCATGCTGACAATTTCGGCAAAATTTAGCAACTTGACCAAGGCCAGAAGGGAGCAGGGTGAGCCAGACGAGTGCTAAGAGGCCAGTCCCGGATCCTGTCTGTCTTTTAGCAGCTCTGGTTGATAATCTCGTCCTTTCCACAG
Seq C2 exon
AGAGTGGCCTGCTCACTGTCCCCTTGGTGCCCAGTGAGGCAAGAAACACAGACACACTGGACAAGCTACGGCAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057315:ENSRNOT00000086611:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.946 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCGTAGATGGCATTGAGGA
R:
CCTGCCGTAGCTTGTCCAGT
Band lengths:
182-895
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]