MmuINT0085478 @ mm10
Intron Retention
Gene
ENSMUSG00000037579 | Kcnh3
Description
potassium voltage-gated channel, subfamily H (eag-related), member 3 [Source:MGI Symbol;Acc:MGI:1341723]
Coordinates
chr15:99240887-99241826:+
Coord C1 exon
chr15:99240887-99240993
Coord A exon
chr15:99240994-99241749
Coord C2 exon
chr15:99241750-99241826
Length
756 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
AAAGCCTGTCCTTTCCACAGAGA
3' ss Score
8.09
Exon sequences
Seq C1 exon
GGTCGTAGATGGCATTGAAGATGGCTGCAGCTCTGACCAGCCCAAGTTCTCTTTCCGAGTGGGTCAGTCTGGCCCAGAATGTAGCAGCAGCCCCTCCCCAGGAACAG
Seq A exon
GTACTGGATGCGGAGACGGGGAACGTTGGTGGGCACCCCATTTGCCTCATAGACCTCAAGCAGAGTGGGATTTGAGTCTGGTGTTAGGAGGAACTGTAGGGCAGCCTGCCTGGAAGCTCTCCCAGGCTGCCAGTGATGATTGGCCTGGAGGTTTGGATAACTGCCTGGCCAACTTTCCAACTTTCCAACGGCGTAAGCTCAGCCCCTCCGTCTTGATTCCGGTCTATAAAATGGGTTGTTGTGCGTGTTAAATGAGAATGTACCTGAGACTCTTGGCACATGTCTGTCTTCCTGGGAGAAAGAGGGCTGGAAAGACTGAGTTGAACCTGGTGCTGGATGAGACAGGCAGCCTGGAAATGGGACATAATCTAGGACAGGATGAGGGACAGATGCAGAGAGCTTCTTCCAGCTAGATGGTGGTGTTTGCCTGTAATCCCGGCAGGCGCTAGGGAGGTGGAGCAGACAGAGCTCAGGGCTCAATCGCCTTGGTTACTCAACAGACTTGAGGGAACATCATGGGTTATGAGACTACCTCATCCTGCTCCACGAGGGGACAGCCTCCTGCAGGGAGGACAGCAGTAGACTGTGTTACTCAGGGATGCAGGGAGGGGTTCTCATACTGACAATTTAGGCAAAATTTGGCAACTTGACCAAGGCCAGAAAGGAGCAGGGTGAGCCAGACCAGTGCTAAGAGGCCAGGCCTGGATCCTGTCTGTCTTTTAGTAGCTCTGGTTGAAAAGCCTGTCCTTTCCACAG
Seq C2 exon
AGAGCGGCCTGCTTACAGTCCCCTTGGGGCCCAGTGAAGCAAGAAACACAGACACGCTGGACAAGCTACGGCAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037579:ENSMUST00000041415:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.946 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCGTAGATGGCATTGAAGA
R:
CCTGCCGTAGCTTGTCCAG
Band lengths:
182-938
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types