HsaINT0084321 @ hg38
Intron Retention
Gene
ENSG00000135519 | KCNH3
Description
potassium voltage-gated channel subfamily H member 3 [Source:HGNC Symbol;Acc:HGNC:6252]
Coordinates
chr12:49556370-49557259:+
Coord C1 exon
chr12:49556370-49556476
Coord A exon
chr12:49556477-49557182
Coord C2 exon
chr12:49557183-49557259
Length
706 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCA
5' ss Score
7.88
3' ss Seq
CCCCATCCTACTACCCACAGAGA
3' ss Score
7.43
Exon sequences
Seq C1 exon
GGTAGTAGATGGCATTGAAGACGGCTGTGGCTCGGACCAGCCCAAGTTCTCTTTCCGCGTGGGCCAGTCTGGCCCGGAATGTAGCAGCAGCCCCTCCCCTGGACCAG
Seq A exon
GTACCAGGGCCCCGGGATGGTCTAGGTTGGTGGGGCAGCCCCTTTGCCTTGTGAACCTCAAGCACTGTTGACCTCTGAGCCTTCAATGTTAGAGAAACTGGCAGACTGCCTGGAGGCCGTCTCACCCCACTACCCCTTGGTGTCGTGCGGGCAGGGGAGTTTGGTGGTGAAGACCAGCACTTTAATTTCGACGCAGCCAGGAACTGGGTTTATATCCTTGCTCTGTCAGCTTTCTAGCAGTGTGAATTTGGCTTCTCTGGCCCCAGCTTCCTGTCTGTAAAAAAATGGGTTGATGTTTACGTTATATAATGTAACTGAAAGCCTTAGCCCAATCTCTGGCTAACTGAAGGGATAGAGGGCTGGGGATCCAGGGGTGAAAATGTCTCCAGGCCAGGGAAGTGGACAAGGTAATGAGCTCCTAGGAATGTCCATTTGCCTGGAGGACAGAGCAAGGGACAGGCACAAAGAACAACTTTTTGAGGGGAAGGAGAGCACTAGGCAGTGTGGCTGAGGGCTGCTGGGTGGTGTTTTCCCTGCCCCTGGAAGTTTGGGCAAAATTCAGCACCTTGGGCAAGGCCAGAAGAGATGATCCTAGGAGTCAGGTCCTACCAGGTCAATGTGCTCTAACTGGGGCAAGGCCTAGACCCCCAAATTGCCTATCTCCTCTTACCAGCCCCAGCTGATAACCCCATCCTACTACCCACAG
Seq C2 exon
AGAGCGGCCTGCTCACTGTTCCCCATGGGCCCAGCGAGGCAAGGAACACAGACACACTGGACAAGCTTCGGCAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135519:ENST00000257981:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.987 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAGTAGATGGCATTGAAGACGG
R:
CCTGCCGAAGCTTGTCCAG
Band lengths:
182-888
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development