BtaEX0018818 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019277 | KCNH3
Description
potassium channel, voltage gated eag related subfamily H, member 3 [Source:HGNC Symbol;Acc:HGNC:6252]
Coordinates
chr5:30444365-30446199:-
Coord C1 exon
chr5:30446093-30446199
Coord A exon
chr5:30445416-30445492
Coord C2 exon
chr5:30444365-30445336
Length
77 bp
Sequences
Splice sites
3' ss Seq
CCCCTTCCTACTGTCCACAGAGA
3' ss Score
9.92
5' ss Seq
GCGGTGGGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GGTCGTAGATGGGATTGAGGACGGCTGTGGCTCCGACCAGCCCCAGTTCTCCTTCCGTGTGAGGCAGTCTGGCCCGGAATGTAGCAGCAGCCCTTCTCCTGGACCAG
Seq A exon
AGAACGGCCTGCTCACTGTCCCCCTTGGGCCCAGCGAGGTGAGGAACACAGACACGCTGGACAAGCTTCGGCAGGCG
Seq C2 exon
GTGATGGAGCTGTCTGAGCAGGTGCTGCAGATGCGGGAGGGGCTGCAGTCCCTTCGCCAGGCTGTGCAGCTGGTCCTGGCACCCCGAGGGGAGGGCCCCTGCCCGGCCGGGGCCTCTGGGCTGCTGCAGCCCCTGTGTGTGGACACTGGGGCATCCTCCTGCTGCCTACAGCCCTCAGCTGGCTCTGTCTTGAGTGGGACCTGGCCCCACCCTCGTCCAGGGCCCCCTCCCCTCATGGCTCCCTGGCCCTGGGGCCCCCCTGCATCTCAGAGCTCACCATGGCCTCGAGCCACTGCTTTTTGGACCTCCACCTCTGACTCGGAGCCCCCAGGCTCAGGAGAACTCTGCCCTGAGCCCAGCACCCCTGGCTTACCGCCTCCCGAGGAAGGGGCTAGGACTGGGCCCCCGGAGCCCATGACCCAGGCTGAGGCTGCCAGCACCGGAGAGCCCCCACCAGCTTCGGGGGGCCACGCCTTGCCCTGGGAGCCCCATAGCCTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019277_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.946 A=1.000 C2=0.889
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATGTAGCAGCAGCCCTTC
R:
CACACACAGGGGCTGCAG
Band lengths:
173-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development