Special

BtaEX0018818 @ bosTau6

Exon Skipping

Gene
Description
potassium channel, voltage gated eag related subfamily H, member 3 [Source:HGNC Symbol;Acc:HGNC:6252]
Coordinates
chr5:30444365-30446199:-
Coord C1 exon
chr5:30446093-30446199
Coord A exon
chr5:30445416-30445492
Coord C2 exon
chr5:30444365-30445336
Length
77 bp
Sequences
Splice sites
3' ss Seq
CCCCTTCCTACTGTCCACAGAGA
3' ss Score
9.92
5' ss Seq
GCGGTGGGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GGTCGTAGATGGGATTGAGGACGGCTGTGGCTCCGACCAGCCCCAGTTCTCCTTCCGTGTGAGGCAGTCTGGCCCGGAATGTAGCAGCAGCCCTTCTCCTGGACCAG
Seq A exon
AGAACGGCCTGCTCACTGTCCCCCTTGGGCCCAGCGAGGTGAGGAACACAGACACGCTGGACAAGCTTCGGCAGGCG
Seq C2 exon
GTGATGGAGCTGTCTGAGCAGGTGCTGCAGATGCGGGAGGGGCTGCAGTCCCTTCGCCAGGCTGTGCAGCTGGTCCTGGCACCCCGAGGGGAGGGCCCCTGCCCGGCCGGGGCCTCTGGGCTGCTGCAGCCCCTGTGTGTGGACACTGGGGCATCCTCCTGCTGCCTACAGCCCTCAGCTGGCTCTGTCTTGAGTGGGACCTGGCCCCACCCTCGTCCAGGGCCCCCTCCCCTCATGGCTCCCTGGCCCTGGGGCCCCCCTGCATCTCAGAGCTCACCATGGCCTCGAGCCACTGCTTTTTGGACCTCCACCTCTGACTCGGAGCCCCCAGGCTCAGGAGAACTCTGCCCTGAGCCCAGCACCCCTGGCTTACCGCCTCCCGAGGAAGGGGCTAGGACTGGGCCCCCGGAGCCCATGACCCAGGCTGAGGCTGCCAGCACCGGAGAGCCCCCACCAGCTTCGGGGGGCCACGCCTTGCCCTGGGAGCCCCATAGCCTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019277_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (No Ref, Alt. Stop)

No structure available
Features
Disorder rate (Iupred):
  C1=0.946 A=1.000 C2=0.889
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATGTAGCAGCAGCCCTTC
R:
CACACACAGGGGCTGCAG
Band lengths:
173-250
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development