DreEX0040878 @ danRer10
Exon Skipping
Gene
ENSDARG00000069560 | kcnh3
Description
potassium voltage-gated channel, subfamily H (eag-related), member 3 [Source:ZFIN;Acc:ZDB-GENE-070912-23]
Coordinates
chr9:28099181-28101655:-
Coord C1 exon
chr9:28101555-28101655
Coord A exon
chr9:28100606-28100658
Coord C2 exon
chr9:28099181-28099265
Length
53 bp
Sequences
Splice sites
3' ss Seq
TTGTGTGGATTTGTCTGCAGTGA
3' ss Score
6.34
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTTCGTGGACGGCATAGAAACAGAAAGCAATTCCAGCTCAACACAAAGGTTTGAGTTCGGTCCCAGCCTACCTCAGAGTGGCCCTCCATCCCCTTCCCCAG
Seq A exon
TGAGCCAAGAGCAGCTGGAGTCAAAGCAGAGCATCACCAAACTGAGTGAGGAG
Seq C2 exon
ATGACTAGTCTATCCCAGCAAGTCTCTCAGCTGAGCAAAGAGCTACAGGAAATGACACGTCTCCTCCGGCCCATACTTGTCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069560-'14-14,'14-13,15-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.536
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGAGTTCGGTCCCAGCCTA
R:
CATGACAAGTATGGGCCGGAG
Band lengths:
136-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]