RnoEX0046028 @ rn6
Exon Skipping
Gene
ENSRNOG00000057315 | Kcnh3
Description
potassium voltage-gated channel subfamily H member 3 [Source:RGD Symbol;Acc:71070]
Coordinates
chr7:140908539-140910422:+
Coord C1 exon
chr7:140908539-140908645
Coord A exon
chr7:140909359-140909435
Coord C2 exon
chr7:140909524-140910422
Length
77 bp
Sequences
Splice sites
3' ss Seq
TAATCTCGTCCTTTCCACAGAGA
3' ss Score
8.31
5' ss Seq
GCGGTGGGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GGTCGTAGATGGCATTGAGGATGGCTGCGGCTCTGACCAGCACAAGTTCTCTTTCCGGGTGGGTCAGTCTGGCCCAGAATGTAGCAGCAGCCCCTCCCCAGGAACAG
Seq A exon
AGAGTGGCCTGCTCACTGTCCCCTTGGTGCCCAGTGAGGCAAGAAACACAGACACACTGGACAAGCTACGGCAGGCG
Seq C2 exon
GTGACGGAGCTGTCTGAACAGGTGCTGCAGATGCGAGAGGGACTGCAGTCACTTCGCCAGGCTGTGCAGCTCATCCTGGTGCCCCAAGGGGAAGGCCAGTGTCCCCGGGTATCAGGAGAGGGGCCATGCCCAGCCACTGCCTCTGGGCTCCTACAACCCCTGCGTGTGGACACTGGGGCATCATCCTACTGCCTGCAGCCCCCAGCAGGTTCAGTCTTGAGTGGGACCTGGCCTCACCCCCGTCCAGGGCATCCCCCTCCCCTCATGGCACCCTGGCCCTGGGGCCCCCCAGCATCTCAGAGCTCCCCCTGGCCTCGAGCCACAGCTTTATGGACCTCCACCTCAGACTCAGAGCCCCCTGGCTCTGGAGACCTCTGCTCTGAGCCCAGCACCCCAGCCTCACCCCCTCCTCCTGAGGAAGGAGCTAGGACTGGGACTCCTGCACCTGTGAGCCAGGCTGAGGCTACCAGTACTGGAGAGCCCCCTCCGGGGTCAGGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057315-'22-18,'22-17,23-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.946 A=1.000 C2=0.940
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTGGCCCAGAATGTAGCA
R:
CATGGCCCCTCTCCTGATACC
Band lengths:
170-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]