BtaALTA0015489-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000016613 | KCNH6
Description
potassium channel, voltage gated eag related subfamily H, member 6 [Source:HGNC Symbol;Acc:HGNC:18862]
Coordinates
chr19:48508463-48510066:+
Coord C1 exon
chr19:48508463-48508501
Coord A exon
chr19:48509979-48509982
Coord C2 exon
chr19:48509983-48510066
Length
4 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
3' ss Seq
ATGCTCTTGTTCCCCACAAGGCA
3' ss Score
4.53
Exon sequences
Seq C1 exon
TATGAAGATAGCTACCAATTACGGAGCACCAACTATGTG
Seq A exon
GCAG
Seq C2 exon
GCGGTGGTCTCCAGTCATCACCCCAACAGGCTCCAGGCAGTCAAGACCACCAACAGGGCTTCTTCCTCAGTGACAACCAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016613-11-16,11-15-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.800
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACCAATTACGGAGCACCA
R:
GAGGAAGAAGCCCTGTTGGTG
Band lengths:
97-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development