RnoALTA0020220-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000008078 | Kcnh6
Description
potassium voltage-gated channel subfamily H member 6 [Source:RGD Symbol;Acc:620304]
Coordinates
chr10:94223777-94225065:+
Coord C1 exon
chr10:94223777-94223970
Coord A exon
chr10:94224981-94224984
Coord C2 exon
chr10:94224985-94225065
Length
4 bp
Sequences
Splice sites
5' ss Seq
GACGTGAGT
5' ss Score
9.22
3' ss Seq
TTGCTCTTGTTCCCTACAAGGCA
3' ss Score
5.82
Exon sequences
Seq C1 exon
GGAAGAATGACATCTTTGGGGAGCCTGCCAGTCTTCATGCCAGGCCAGGCAAATCTAGCGCAGATGTGCGCGCCCTGACCTACTGCGACCTGCATAAGATCCATCGAGCAGACCTGCTGGAGGTGCTGGACATGTACCCTGCCTTTGCAGACACCTTCTGGAATAAGCTGGAGGTCACCTTCAACCTGCGGGAC
Seq A exon
GCAG
Seq C2 exon
ATGGGGGTCTCCAGTCAACACCCCGACAGGCCCCAGGCCACCAAGACCCCCAAGGCTTCTTCCTCAATGACAGTCAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008078-15-16,15-15-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.878
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PD(53.4=72.3)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTGGAGGTCACCTTCAAC
R:
GAAGAAGCCTTGGGGGTCTTG
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]