RnoEX0046048 @ rn6
Exon Skipping
Gene
ENSRNOG00000008078 | Kcnh6
Description
potassium voltage-gated channel subfamily H member 6 [Source:RGD Symbol;Acc:620304]
Coordinates
chr10:94223777-94225065:+
Coord C1 exon
chr10:94223777-94223970
Coord A exon
chr10:94224236-94224302
Coord C2 exon
chr10:94224981-94225065
Length
67 bp
Sequences
Splice sites
3' ss Seq
CTTCTTTTATGTTGTTTTAGTCT
3' ss Score
8.59
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GGAAGAATGACATCTTTGGGGAGCCTGCCAGTCTTCATGCCAGGCCAGGCAAATCTAGCGCAGATGTGCGCGCCCTGACCTACTGCGACCTGCATAAGATCCATCGAGCAGACCTGCTGGAGGTGCTGGACATGTACCCTGCCTTTGCAGACACCTTCTGGAATAAGCTGGAGGTCACCTTCAACCTGCGGGAC
Seq A exon
TCTTGTCCTTTGCACGTGATTCTCCTTATGGCCATTATCTTAATGAATAAACCGACCACCAGAGAGG
Seq C2 exon
GCAGATGGGGGTCTCCAGTCAACACCCCGACAGGCCCCAGGCCACCAAGACCCCCAAGGCTTCTTCCTCAATGACAGTCAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008078_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.043 C2=0.878
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PD(53.4=72.3)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000010816fB7190
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGCAAATCTAGCGCAGAT
R:
TTGACTGGAGACCCCCATCTG
Band lengths:
172-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]