RnoINT0077787 @ rn6
Intron Retention
Gene
ENSRNOG00000008078 | Kcnh6
Description
potassium voltage-gated channel subfamily H member 6 [Source:RGD Symbol;Acc:620304]
Coordinates
chr10:94223777-94225065:+
Coord C1 exon
chr10:94223777-94223970
Coord A exon
chr10:94223971-94224980
Coord C2 exon
chr10:94224981-94225065
Length
1010 bp
Sequences
Splice sites
5' ss Seq
GACGTGAGT
5' ss Score
9.22
3' ss Seq
TTGCTCTTGTTCCCTACAAGGCA
3' ss Score
5.82
Exon sequences
Seq C1 exon
GGAAGAATGACATCTTTGGGGAGCCTGCCAGTCTTCATGCCAGGCCAGGCAAATCTAGCGCAGATGTGCGCGCCCTGACCTACTGCGACCTGCATAAGATCCATCGAGCAGACCTGCTGGAGGTGCTGGACATGTACCCTGCCTTTGCAGACACCTTCTGGAATAAGCTGGAGGTCACCTTCAACCTGCGGGAC
Seq A exon
GTGAGTCTGGGCCTGTGGGCCAGGGTAGTGGTGGGTCACAGAGGGTTGGTTGTAGAGAGCACCCAGTCAGCCTGCTAAGGACTTGATCTGTCTGGCCTAAGGGGACTCGTTTGACTGCCGCCTCTTCCCTCCAACCCCTTGTGGGTTCTTTGCTGAGATGCTTCTGTACCGCTATGCATAAACATAGCAGTAACCACGGTGAGGGCTTCCATTTAATGAGCAGCTACTATGAGCTAAATCCTGGGCTTCTTTTATGTTGTTTTAGTCTTGTCCTTTGCACGTGATTCTCCTTATGGCCATTATCTTAATGAATAAACCGACCACCAGAGAGGGTAAGTTAATTGGCCGGAGCCATATGGTTAGTAAAAGCAGAGCCAAAATGTGGATTCAAGTGGTCTGGCTTTAAAATCCAGGCTTTTCCATCACATGTCACTAAGCTGAGAAGATGGGACCTGACACCAGAGGCCCCCTGATGCCAGGCATGGGGATATGGCTGTCCCTTAAGTTTATTACTCAGCCACCCAGGAGAAATAAAGGGCCATTCATTTAAAGAGGTAAAGAAGACACAAGGGCACATAAGCACCGGCCAATTTCTGGTGGACTGAGGGTTCCAGACCCAGTGCTCACCAAGAGGTACTTACTTACGGGCCCATGACGGGGTGTGGGCCACCAGGACACTGGAGAAAAGGCAGTGGGGGAGGAGTTCTTCTGCCATCTATCCTCAAGGCTTGCTGTTCATAAAATCATCTCCAAAGACTTTTCTGGGGGATTCTACTTGGTAACGTGGGTAAGTTCATCACCTCCAGGCCTGTTTACCTACCTGAGAGCCTCTTTGGGGAGAGCCTGCAGCAAGTTGCAGAGTTCCCCTGGGGTGTCTAGATGCCTGTTTCTACTTTTTCACCCAGTTGTTATAAGGGCCACAGAAGGGAACTTGGGGACAGGGAGGAACAAAGAAAGAGATCCTGTCCTAGCTTTGGTCCCTGTCACTTGTTGCTCTTGTTCCCTACAAG
Seq C2 exon
GCAGATGGGGGTCTCCAGTCAACACCCCGACAGGCCCCAGGCCACCAAGACCCCCAAGGCTTCTTCCTCAATGACAGTCAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008078:ENSRNOT00000010816:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.878
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PD(53.4=72.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGACATCTTTGGGGAGCCT
R:
TGACTGTCATTGAGGAAGAAGCC
Band lengths:
270-1280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]