MmuALTA0009523-2/3 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000001901 | Kcnh6
Description
potassium voltage-gated channel, subfamily H (eag-related), member 6 [Source:MGI Symbol;Acc:MGI:2684139]
Coordinates
chr11:105885039-105887192:+
Coord C1 exon
chr11:105885039-105885232
Coord A exon
chr11:105887108-105887111
Coord C2 exon
chr11:105887112-105887192
Length
4 bp
Sequences
Splice sites
5' ss Seq
GACGTGAGT
5' ss Score
9.22
3' ss Seq
TTGCTCTTGTTCCCTACAAGGCA
3' ss Score
5.82
Exon sequences
Seq C1 exon
GGAAGAATGACATCTTTGGGGAGCCTGCCAGTCTCCATGCCAGACCAGGCAAATCAAGCGCCGATGTGCGTGCCCTGACCTACTGCGACCTGCACAAGATCCATCGAGCAGACCTGCTGGAGGTGCTGGACATGTACCCCGCCTTTGCAGATACCTTCTGGAATAAGCTAGAGGTCACCTTCAACCTGCGGGAC
Seq A exon
GCAG
Seq C2 exon
ATGGGGGTCTCCACTCAACACCCCGACAGGCCCCAGGCAACCAAGACCCCCAAGGCTTCTTCCTCAATGACAGCCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001901-11-12,11-11,11-10-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.793
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PD(53.4=72.3)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGGTGCTGGACATGTAC
R:
GTGTTGAGTGGAGACCCCCAT
Band lengths:
99-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: