BtaALTA0015946-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000002280 | KIF5B
Description
kinesin family member 5B [Source:HGNC Symbol;Acc:HGNC:6324]
Coordinates
chr13:33647996-33654859:+
Coord C1 exon
chr13:33647996-33648139
Coord A exon
chr13:33654671-33654673
Coord C2 exon
chr13:33654674-33654859
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
TGTTTGTCCTTTTCTCACAGCAG
3' ss Score
8.63
Exon sequences
Seq C1 exon
GCAAGTTTAGCAAGTATAGATGCTGAGCTTCAGAAACTTAAGGAAATGACCAACCACCAGAAAAAAAGAGCGGCAGAGATGATGGCATCTTTACTAAAAGACCTGGCAGAAATTGGAATTGCTGTGGGAAACAATGACGTAAAG
Seq A exon
CAG
Seq C2 exon
CCTGAGGGAACTGGCATGATAGATGAAGAATTCACTGTTGCAAGGCTCTACATTAGCAAAATGAAGTCAGAAGTAAAAACCATGGTAAAACGCTGCAAACAGTTAGAAAGCACACAAACTGAGAGCAACAAGAAAATGGAAGAAAATGAAAAGGAGTTAGCAGCATGCCAGCTTCGTATCTCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002280-17-18,17-17-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.562 A=NA C2=0.556
Domain overlap (PFAM):
C1:
PF045827=Reo_sigmaC=FE(30.1=100)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAGCGGCAGAGATGATGG
R:
TATCATGCCAGTTCCCTCAGG
Band lengths:
101-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development