GgaALTA0003765-2/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000007215 | KIF5B
Description
kinesin family member 5B [Source:HGNC Symbol;Acc:HGNC:6324]
Coordinates
chr2:14154508-14155589:+
Coord C1 exon
chr2:14154508-14154651
Coord A exon
chr2:14155401-14155403
Coord C2 exon
chr2:14155404-14155589
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TGTGATTCCACAATTTTCAGCAG
3' ss Score
4.95
Exon sequences
Seq C1 exon
GTTACTTTAGCTAGTATAGATGCAGAGCTTCAAAAACTTAAAGAAATGACTAACCATCAGAAGAAACGAGCAACGGAGATGATGGCCTCCTTACTAAAAGATCTTGCAGAAATAGGAATTGCAGTAGGAAATAATGATGTCAAG
Seq A exon
CAG
Seq C2 exon
CCCGAGGGAACTGGCATGATAGATGAAGAATTCACAGTTGCAAGGCTGTACATAAGCAAAATGAAATCAGAAGTAAAAACAATGGTAAAACGGTGCAAACAGTTGGAAGGCACGCAGGCTGAGAGCAATAAGAAAATGGAAGAAAACGAGAAGGAGTTGGCTGCCTGTCAACTCCGTATCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007215-21-22,21-21,21-20-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=NA C2=0.413
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGGAGATGATGGCCTCCTT
R:
TATCATGCCAGTTCCCTCGGG
Band lengths:
94-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]