MmuALTA1003028-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000006740 | Kif5b
Description
kinesin family member 5B [Source:MGI Symbol;Acc:MGI:1098268]
Coordinates
chr18:6214569-6216366:-
Coord C1 exon
chr18:6216223-6216366
Coord A exon
chr18:6214670-6214700
Coord C2 exon
chr18:6214569-6214669
Length
31 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTA
5' ss Score
7.52
3' ss Seq
ATTTCATGTTTTTCTCTCAGCAA
3' ss Score
7.7
Exon sequences
Seq C1 exon
GCAACTTTAGCAAGTATTGATGCTGAGCTTCAGAAGCTGAAGGAAATGACCAACCACCAGAAGAAACGAGCAGCTGAAATGATGGCATCATTATTAAAAGACCTTGCAGAAATAGGAATTGCTGTGGGGAATAACGATGTGAAG
Seq A exon
CAACCAGAAGGAACTGGTATGATAGATGAAG
Seq C2 exon
AGTTTACTGTTGCAAGACTCTACATTAGCAAAATGAAATCAGAAGTAAAGACCATGGTGAAACGCTGCAAACAGCTAGAAAGCACACAGACTGAGAGCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006740-26-31,26-30,26-29-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.542 A=NA C2=0.533
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTGGGGAATAACGATGTG
R:
GTTGCTCTCAGTCTGTGTGCT
Band lengths:
126-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types