BtaALTA0017606-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000014088 | MBNL3
Description
muscleblind-like splicing regulator 3 [Source:HGNC Symbol;Acc:HGNC:20564]
Coordinates
chrX:16118743-16122309:-
Coord C1 exon
chrX:16122073-16122309
Coord A exon
NA
Coord C2 exon
chrX:16118743-16118800
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
ATGTGTTCCACCGCCAACAGGCT
3' ss Score
5.95
Exon sequences
Seq C1 exon
GTTTGCCGTGAATTTCAGCGAGGTAATTGTACCCGTGGTGAGAATGATTGCCGCTATGCTCACCCTACTGATGTGTCCATGATTGAGACAAGTGATAATACTGTGACCATCTGCATGGATTATATCAAAGGTCGATGCTCCCGGGAGAAATGCAAGTATTTTCATCCTCCTGCGCACTTGCAAGCCAAACTCAAAGCAGCTCATTACCAGATGAACCATTCAGCTGCCACTGCAATG
Seq A exon
NA
Seq C2 exon
GCTCTGCCTAACGTGCCGATGCCGCAGCCGCAGCCACAGCCGCAGTTCATTCCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014088-10-4,10-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.076 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=PD(81.5=27.8)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATTGCCGCTATGCTCACC
R:
GTAGGAATGAACTGCGGCTGT
Band lengths:
250-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development