MmuALTA0010642-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000036109 | Mbnl3
Description
muscleblind-like 3 (Drosophila) [Source:MGI Symbol;Acc:MGI:2444912]
Coordinates
chrX:51128921-51130341:-
Coord C1 exon
chrX:51130105-51130341
Coord A exon
NA
Coord C2 exon
chrX:51128921-51128966
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
GTGTTTTCCACTGCCAACAGGCT
3' ss Score
8.03
Exon sequences
Seq C1 exon
GTTTGCCGTGAATTTCAGCGTGGAAATTGTACCCGTGGGGAGAGCGAGTGCCGCTATGCTCACCCTACGGATGTTTCCATGATTGAAGTCACTGATAATTCTGTGACAATCTGCATGGATTACATTAAAGGCCGATGCTCCCGGGAGAAATGCAAGTACTTTCATCCTCCTCCCCACTTGCAGGCCAAACTCAGGGCAGCTCATCACCAGATGAACCATTCTGCTGCCAATGCAATG
Seq A exon
NA
Seq C2 exon
GCTCTGGCTAACATGCAGATTCCTCAGCAGGCTTTTATCCCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036109-22-18,22-17-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.120 A=NA C2=0.503
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=PD(81.5=27.8)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCGTGGAAATTGTACCCG
R:
AAAGCCTGCTGAGGAATCTGC
Band lengths:
258-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types