RnoALTA0023450-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000002487 | Mbnl3
Description
muscleblind-like splicing regulator 3 [Source:RGD Symbol;Acc:1565834]
Coordinates
chrX:138392796-138394422:-
Coord C1 exon
chrX:138394183-138394422
Coord A exon
NA
Coord C2 exon
chrX:138392796-138392841
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
GTGTTTTCCACTGCCAACAGGCT
3' ss Score
8.03
Exon sequences
Seq C1 exon
GTTTGCCGTGAATTTCAGCGTGGAAACTGTACCCGTGGGGAGAGCGAGTGCCGCTATGCTCACCCCACGGATGTTTCCATGATTGAAGTCACTGATAATACTGTGACAATCTGCATGGATTACATTAAAGGCCGATGCTCCCGGGAGAAATGCAAGTACTTTCACCCACCTCCCCACTTGCAGGCCAAACTCAGGGCAGCTCATCACCAGATGAACCATTCCGCTGCTGCCAACGCAATG
Seq A exon
NA
Seq C2 exon
GCTCTGGCTAACATGCAGATTCCGCAGCCGGCTTTCATCCCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002487-8-7,8-6-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=PD(81.5=27.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGCGTGGAAACTGTACCC
R:
GCGGAATCTGCATGTTAGCCA
Band lengths:
252-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]