BtaALTA0018336-4/4 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000011532 | MLLT6
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 [Source:HGNC Symbol;Acc:HGNC:7138]
Coordinates
chr19:39941965-39944651:+
Coord C1 exon
chr19:39941965-39942058
Coord A exon
chr19:39944478-39944612
Coord C2 exon
chr19:39944613-39944651
Length
135 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CCTCTCAATTCTCTCTGCAGAAG
3' ss Score
10.05
Exon sequences
Seq C1 exon
TGCCCAAATGGCAGGCCTGCTGTGTGAGGAAGAAGTACTGGAGGTTGACAATGTCAAGTACTGTGGCTATTGCAAATACCACTTCAGCAAGATG
Seq A exon
AAGACATCCCGGCACTCCAGTGGGGGCGGGGGCGGCAGCGGAGGAACAGGAGGAGGAGGGGGTAGCACAGGGGGAGGCAGCAGCAGCTTTATTGCTGGCCGGAGGAGCAGGTCGGCCTCCCCATCCGCCCAGCAG
Seq C2 exon
GAGAAGCACCCTTCCCACCATGAGAGGGGCCAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011532-5-13,5-12,5-11,5-10-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.948
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=PD(22.9=84.4)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCCTGCTGTGTGAGGAA
R:
CTTCTTCTGGCCCCTCTCATG
Band lengths:
122-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development