MmuALTA0011055-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000038437 | Mllt6
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6 [Source:MGI Symbol;Acc:MGI:1935145]
Coordinates
chr11:97667075-97669499:+
Coord C1 exon
chr11:97667075-97667168
Coord A exon
chr11:97669424-97669426
Coord C2 exon
chr11:97669427-97669499
Length
3 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CTCTCAATCTCTTCCCCCAGAAG
3' ss Score
9.88
Exon sequences
Seq C1 exon
TGCCCAGATGGCTGGCCTGCTGTGTGAGGAAGAAGTCCTGGAGGTGGACAACGTCAAGTACTGCGGCTACTGCAAATACCACTTCAGCAAGATG
Seq A exon
AAG
Seq C2 exon
ACATCCCGGCACTCCAGCGGGGGAGGAGGAGGAGCAGGAGGAGGCAGCAGCGGCGGGGGAGGAGGTGGCAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038437-10-16,10-15-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.958
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=PD(22.9=84.4)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGGTGGACAACGTCAAG
R:
CTCCTCCTGCTCCTCCTCCTC
Band lengths:
100-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types