GgaALTA0000696-2/2 @ galGal3
Alternative 3'ss
Description
NA
Coordinates
chr27:3885713-3886830:+
Coord C1 exon
chr27:3885713-3885806
Coord A exon
chr27:3886723-3886725
Coord C2 exon
chr27:3886726-3886830
Length
3 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CCCTTCCCCGCTGACCCCAGAAG
3' ss Score
6.62
Exon sequences
Seq C1 exon
TGCCCAGATGGCCGGCCTCCTGTGTGAGGAGGAAGTCCTGGAAGTTGACAATGTCAAGTATTGCGGCTACTGCAAGTACCACTTCAATAAGATG
Seq A exon
AAG
Seq C2 exon
ACCTCACGGCACTCTGCAGGCAGCTCCTTCATTGCTGGGAGGAGGAGTCGCTCCACGTCCCCCACCCAGGAGAAGCACGTGTCCCACCACGACAGGCCAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001574-6-6,6-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.861
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=PD(22.9=84.4),PF045929=SelP_N=FE(26.3=100)
A:
NA
C2:
PF045929=SelP_N=FE(29.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAAGTATTGCGGCTACTGC
R:
GACTCCTCCTCCCAGCAATGA
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]