HsaALTA1062821-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000275023 | MLLT6
Description
MLLT6, PHD finger domain containing [Source:HGNC Symbol;Acc:HGNC:7138]
Coordinates
chr17:38709482-38712014:+
Coord C1 exon
chr17:38709482-38709575
Coord A exon
chr17:38711847-38711849
Coord C2 exon
chr17:38711850-38712014
Length
3 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CTCTCAAATCTCTCCCGCAGAAG
3' ss Score
10.17
Exon sequences
Seq C1 exon
TGCCCAAATGGCAGGCTTGCTGTGTGAGGAAGAAGTGCTGGAGGTGGACAACGTCAAGTACTGCGGCTACTGCAAATACCACTTCAGCAAGATG
Seq A exon
AAG
Seq C2 exon
ACATCCCGGCACAGCAGCGGGGGAGGCGGAGGAGGCGCTGGAGGAGGAGGTGGCAGCATGGGGGGAGGTGGCAGTGGTTTCATCTCTGGGAGGAGAAGCCGGTCAGCCTCACCATCCACGCAGCAGGAGAAGCACCCCACCCACCACGAGAGGGGCCAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000275023-13-20,13-19,13-18-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.946
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=PD(22.9=84.4),PF128102=Gly_rich=PU(15.4=59.4)
A:
NA
C2:
PF128102=Gly_rich=FE(44.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGGCTACTGCAAATACCA
R:
ATGCTGCCACCTCCTCCTC
Band lengths:
93-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains