BtaALTA0018796-8/8 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000011585 | MST1
Description
macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]
Coordinates
chr22:51084536-51084902:+
Coord C1 exon
chr22:51084536-51084613
Coord A exon
chr22:51084674-51084879
Coord C2 exon
chr22:51084880-51084902
Length
206 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
GGCCTTCGTCTCCCCCTCAGCCA
3' ss Score
6.2
Exon sequences
Seq C1 exon
GCAGGGCCAGCACTTCTGCGGAGGCTCCCTAGTGAAGGAGCAGTGGGTTCTGACTGCCCGGCAGTGTTTCTCCTCCTG
Seq A exon
CCACCTTCCCTGGCAAGTCACCAGGTGAGCGCTGGGCGGCAGACCCTGAGTCTCAACTCATCTAGCAGAGCTTCTCTCTCAGCCATATGTCTCTCGTGGGCTATGAGGTGTGGCTGGGCACCCTGTTCCAGGACCCACAGCCTGGGGAGCCAGACCTGCAGCACATCCCAATGGCCAAGATGGTCTGTGGGCCCTCTGGTTCCCAG
Seq C2 exon
CTTGTTCTGCTCAAGTTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011585-18-23,18-22,18-21,18-20,18-19,18-18,18-17,18-16-8/8
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.080
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(11.8=100)
A:
NA
C2:
PF0008921=Trypsin=FE(22.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development