BtaEX0023060 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011585 | MST1
Description
macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]
Coordinates
chr22:51084257-51084902:+
Coord C1 exon
chr22:51084257-51084377
Coord A exon
chr22:51084536-51084613
Coord C2 exon
chr22:51084756-51084902
Length
78 bp
Sequences
Splice sites
3' ss Seq
CCTAACCCACATTCCTGCAGGCA
3' ss Score
7.22
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
ACCAGGTGCTGTTTGATAAATGTGGCAAGAGAGTGACACGAGTGGACCCGTTGCACTCCAAGCTGCGTGTGGTCGGGGGCCAGCCTGGGAACTCACCCTGGACAGTCAGCTTGCGCAACCG
Seq A exon
GCAGGGCCAGCACTTCTGCGGAGGCTCCCTAGTGAAGGAGCAGTGGGTTCTGACTGCCCGGCAGTGTTTCTCCTCCTG
Seq C2 exon
CCATATGTCTCTCGTGGGCTATGAGGTGTGGCTGGGCACCCTGTTCCAGGACCCACAGCCTGGGGAGCCAGACCTGCAGCACATCCCAATGGCCAAGATGGTCTGTGGGCCCTCTGGTTCCCAGCTTGTTCTGCTCAAGTTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011585_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.220 A=0.000 C2=0.080
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(7.7=41.5)
A:
PF0008921=Trypsin=FE(11.8=100)
C2:
PF0008921=Trypsin=FE(22.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACTCACCCTGGACAGTCA
R:
ACTTGAGCAGAACAAGCTGGG
Band lengths:
174-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development