MmuEX0029859 @ mm10
Exon Skipping
Gene
ENSMUSG00000032591 | Mst1
Description
macrophage stimulating 1 (hepatocyte growth factor-like) [Source:MGI Symbol;Acc:MGI:96080]
Coordinates
chr9:108083594-108084207:+
Coord C1 exon
chr9:108083594-108083702
Coord A exon
chr9:108083868-108083941
Coord C2 exon
chr9:108084061-108084207
Length
74 bp
Sequences
Splice sites
3' ss Seq
ATCTTTACTCCTCTAGACAGGGC
3' ss Score
3.58
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
ACCAGGTGGTGTTTGAAAAGTGTGGCAAGAGAGTTGACAAGAGTAATAAACTTCGTGTGGTGGGAGGCCATCCTGGGAACTCCCCATGGACGGTCAGCTTGCGGAATCG
Seq A exon
GGCCAGCATTTCTGTGGGGGCTCCCTAGTGAAGGAGCAGTGGGTACTGACTGCCCGGCAATGCATCTGGTCATG
Seq C2 exon
CCACGAACCTCTCACAGGATACGAGGTATGGTTGGGTACAATTAACCAGAACCCACAGCCTGGAGAGGCAAACCTGCAGAGGGTCCCAGTGGCCAAGGCAGTGTGCGGCCCTGCAGGCTCCCAGCTTGTTCTGCTCAAGCTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032591-'20-20,'20-19,21-20
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.216 A=0.000 C2=0.040
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(7.7=45.9)
A:
PF0008921=Trypsin=FE(11.8=100)
C2:
PF0008921=Trypsin=FE(22.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGTGTTTGAAAAGTGTGGC
R:
CAGGCTGTGGGTTCTGGTTAA
Band lengths:
167-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types