GgaEX6030396 @ galGal3
Exon Skipping
Gene
ENSGALG00000004293 | F1NWX6_CHICK
Description
NA
Coordinates
chr3:47280327-47281793:+
Coord C1 exon
chr3:47280327-47280447
Coord A exon
chr3:47281199-47281273
Coord C2 exon
chr3:47281653-47281793
Length
75 bp
Sequences
Splice sites
3' ss Seq
GTCTTTCTGCTCTATTACAGTTA
3' ss Score
9.26
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
CTCCTGCTCAGTATGAGTGTGGGAAGGCCAAGGTCAGACCAAAGCTGTGTGCTCAAAGGATTGTTGCTGGGTGTATTTCACATCCACACTCTTGGCCCTGGCAAATCAGTCTCCGGACAAG
Seq A exon
TTATGGCTTGCATTTCTGTGGGGGAACACTGATAGACCCAAAGTGGGTTCTTACTGCTGCTCACTGCTTAGAAAA
Seq C2 exon
GTCATTACGGCCATCTTCGTATAAAGTATACCTCGGATTACACGAAGAAAGAGCATTGGAATCATCAGTGCAGAAAAGAGATGTTGAGAAACTGTTCAAGGAGCCTCACGGGCAGGACATTGCTCTACTAAAACTGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004293-'16-16,'16-15,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(9.0=48.8)
A:
PF0008921=Trypsin=FE(11.2=100)
C2:
PF0008921=Trypsin=FE(21.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAAAGGATTGTTGCTGGG
R:
CGTGAGGCTCCTTGAACAGTT
Band lengths:
181-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]