HsaEX6050346 @ hg38
Exon Skipping
Gene
ENSG00000122194 | PLG
Description
plasminogen [Source:HGNC Symbol;Acc:HGNC:9071]
Coordinates
chr6:160736887-160739208:+
Coord C1 exon
chr6:160736887-160737007
Coord A exon
chr6:160738538-160738612
Coord C2 exon
chr6:160739068-160739208
Length
75 bp
Sequences
Splice sites
3' ss Seq
GAACTAAATCCTCTTTCCAGGTT
3' ss Score
8
5' ss Seq
GAAGTATGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
CGGCCCCTTCATTTGATTGTGGGAAGCCTCAAGTGGAGCCGAAGAAATGTCCTGGAAGGGTTGTAGGGGGGTGTGTGGCCCACCCACATTCCTGGCCCTGGCAAGTCAGTCTTAGAACAAG
Seq A exon
GTTTGGAATGCACTTCTGTGGAGGCACCTTGATATCCCCAGAGTGGGTGTTGACTGCTGCCCACTGCTTGGAGAA
Seq C2 exon
GTCCCCAAGGCCTTCATCCTACAAGGTCATCCTGGGTGCACACCAAGAAGTGAATCTCGAACCGCATGTTCAGGAAATAGAAGTGTCTAGGCTGTTCTTGGAGCCCACACGAAAAGATATTGCCTTGCTAAAGCTAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122194-'27-36,'27-35,28-36=AN
Average complexity
A_S
Mappability confidence:
62%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(9.0=48.8)
A:
PF0008921=Trypsin=FE(11.2=100)
C2:
PF0008921=Trypsin=FE(21.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCTGGAAGGGTTGTAGGG
R:
GCTCCAAGAACAGCCTAGACAC
Band lengths:
178-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains