RnoEX6000923 @ rn6
Exon Skipping
Gene
ENSRNOG00000017223 | Plg
Description
plasminogen [Source:RGD Symbol;Acc:619893]
Coordinates
chr1:48530530-48532953:-
Coord C1 exon
chr1:48532830-48532953
Coord A exon
chr1:48531269-48531346
Coord C2 exon
chr1:48530530-48530670
Length
78 bp
Sequences
Splice sites
3' ss Seq
TCTTGTTTTCTGTCCCCCAGATT
3' ss Score
11.17
5' ss Seq
GAAGTACGT
5' ss Score
7.46
Exon sequences
Seq C1 exon
CATCATTATCGTCCTTTGAATGTGGGAAGCCTCAGGTGGAGCCGAAGAAATGCCCTGGGAGGGTGGTGGGTGGCTGTGTGGCCAACCCTCACTCCTGGCCCTGGCAAATCAGCCTTAGAACAAG
Seq A exon
ATTTTCTGGACAGCACTTCTGTGGCGGTACTTTAATATCCCCAGAGTGGGTGCTGACTGCCGCTCACTGCTTGGAGAA
Seq C2 exon
ATCTTCGAGACCTGAATTCTACAAGGTTATCCTGGGAGCACACGAAGAACGAATCCTTGGGTCAGATGTTCAGCAAATAGCAGTAACCAAACTGGTCTTGGAACCCAACGACGCTGACATTGCCCTGCTGAAGCTAAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017223-'23-23,'23-22,24-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(15.0=47.6)
A:
PF0008921=Trypsin=FE(11.6=100)
C2:
PF0008921=Trypsin=FE(21.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGTGGGAAGCCTCAGGTG
R:
TGCTGAACATCTGACCCAAGG
Band lengths:
182-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]