MmuEX6075142 @ mm10
Exon Skipping
Gene
ENSMUSG00000059481 | Plg
Description
plasminogen [Source:MGI Symbol;Acc:MGI:97620]
Coordinates
chr17:12408990-12411601:+
Coord C1 exon
chr17:12408990-12409113
Coord A exon
chr17:12410886-12410963
Coord C2 exon
chr17:12411461-12411601
Length
78 bp
Sequences
Splice sites
3' ss Seq
TCTTGTTTTCTGTCCCCCAGATT
3' ss Score
11.17
5' ss Seq
GAAGTACGT
5' ss Score
7.46
Exon sequences
Seq C1 exon
CATCAGCATCATCCTTTGAGTGCGGGAAACCTCAGGTGGAACCGAAGAAATGCCCTGGGAGGGTGGTGGGTGGCTGCGTGGCCAACCCTCACTCCTGGCCCTGGCAAATCAGCCTTAGAACAAG
Seq A exon
ATTTACCGGACAGCACTTCTGTGGCGGTACTTTAATAGCCCCAGAGTGGGTTCTGACTGCTGCCCACTGTTTGGAGAA
Seq C2 exon
ATCTTCAAGACCTGAATTCTACAAGGTTATCCTGGGTGCGCACGAAGAATATATCCGTGGGTTGGATGTTCAGGAAATATCAGTAGCCAAACTGATCTTGGAGCCCAACAACCGTGACATTGCCCTGCTGAAACTAAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059481-'23-25,'23-24,24-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(21.3=47.6)
A:
PF0008921=Trypsin=FE(11.6=100)
C2:
PF0008921=Trypsin=FE(21.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATCATCCTTTGAGTGCGG
R:
ATATTCTTCGTGCGCACCCAG
Band lengths:
172-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types