HsaEX6056041 @ hg19
Exon Skipping
Gene
ENSG00000173531 | MST1
Description
macrophage stimulating 1 (hepatocyte growth factor-like) [Source:HGNC Symbol;Acc:7380]
Coordinates
chr3:49722171-49722815:-
Coord C1 exon
chr3:49722695-49722815
Coord A exon
chr3:49722445-49722522
Coord C2 exon
chr3:49722171-49722317
Length
78 bp
Sequences
Splice sites
3' ss Seq
CTAATTCCCCACTCCTCTAGGCA
3' ss Score
7.69
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
ACCAGGTGCAGTTTGAGAAGTGTGGCAAGAGGGTGGATCGGCTGGATCAGCGGCGTTCCAAGCTGCGCGTGGTTGGGGGCCATCCGGGCAACTCACCCTGGACAGTCAGCTTGCGGAATCG
Seq A exon
GCAGGGCCAGCATTTCTGCGGGGGGTCTCTAGTGAAGGAGCAGTGGATACTGACTGCCCGGCAGTGCTTCTCCTCCTG
Seq C2 exon
CCATATGCCTCTCACGGGCTATGAGGTATGGTTGGGCACCCTGTTCCAGAACCCACAGCATGGAGAGCCAAGCCTACAGCGGGTCCCAGTAGCCAAGATGGTGTGTGGGCCCTCAGGCTCCCAGCTTGTCCTGCTCAAGCTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173531-'27-36,'27-33,28-36=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.390 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(7.7=41.5)
A:
PF0008921=Trypsin=FE(11.8=100)
C2:
PF0008921=Trypsin=FE(22.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGTGTGGCAAGAGGGTG
R:
CATGCTGTGGGTTCTGGAACA
Band lengths:
169-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)