GgaEX1037249 @ galGal4
Exon Skipping
Gene
ENSGALG00000002722 | MST1
Description
hepatocyte growth factor-like protein precursor [Source:RefSeq peptide;Acc:NP_990544]
Coordinates
chr12:2482079-2482556:+
Coord C1 exon
chr12:2482079-2482190
Coord A exon
chr12:2482268-2482345
Coord C2 exon
chr12:2482410-2482556
Length
78 bp
Sequences
Splice sites
3' ss Seq
GCCAATCCCCGTGCCTGCAGGGC
3' ss Score
8.24
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
ATGCAGTGACATTCGAGGAGTGCGGCCGGCGGGACGAGAGGCTGCAGCAGAAGCAACGTGTGGTGGGTGGGATGCCCGGCAACTCGCCGTGGACCGTCAGCATCCGCAACCG
Seq A exon
GGCCGGCTTGCACTTCTGCGGTGGGTCGCTGGTGAAGGAGCAGTGGGTGATCAGCACGCAGCAGTGCTTCTCCTCCTG
Seq C2 exon
TGATGCGGACCTGTCAGGCTATGAGGTGCACCTGGGGACGCTGTTCAAGGACCCCAGCCCCACCGACCCTGACCTGCAGGCCATCCCGATTGTACGCATCATCTGTGGCCCTTCTGAGTCCCACTTGGTGCTGCTGAAGCTGGCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002722_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.289 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(7.7=44.7)
A:
PF0008921=Trypsin=FE(11.8=100)
C2:
PF0008921=Trypsin=FE(22.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGAAGCAACGTGTGGTG
R:
GGCCACAGATGATGCGTACAA
Band lengths:
177-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]