DreEX0047663 @ danRer10
Exon Skipping
Gene
ENSDARG00000103308 | mst1
Description
macrophage stimulating 1 [Source:ZFIN;Acc:ZDB-GENE-020806-3]
Coordinates
chr6:53403564-53405780:-
Coord C1 exon
chr6:53405669-53405780
Coord A exon
chr6:53404580-53404657
Coord C2 exon
chr6:53403564-53403710
Length
78 bp
Sequences
Splice sites
3' ss Seq
AGAATGTTTGTGTTTTTCAGGAA
3' ss Score
9.14
5' ss Seq
CTGGTAACT
5' ss Score
5.45
Exon sequences
Seq C1 exon
CCGAGGTTGAGTTTAATGAGTGCGGAAAGCGTGAAGACCGGCTGAGGTCCAGGTTAAGAATCGTGGGCGGCACACCTGGAAACTCCCCCTGGACCGTCAGCCTCAGAGATCG
Seq A exon
GAAAGGGAATCACTTCTGTGGAGGCTCTCTGGTCAGTTCTGAATGGGTCATCAGCACTAAACAGTGCTTCTCATCCTG
Seq C2 exon
TTATGTGGACCTGACGGGATACACCGCTATGATGGGCACCTTGTTTCGTGACCCAAAAGAGGGAGAACCAGACCTACAGAGGATTTCTCTCACCAAAATCGTCTGCGGCCCTTCTGAATCCCACCTGGTCATGCTGCAGCTGGAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103308_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.237 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(7.7=44.7)
A:
PF0008921=Trypsin=FE(11.8=100)
C2:
PF0008921=Trypsin=FE(22.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTTAAGAATCGTGGGCGG
R:
CCGCAGACGATTTTGGTGAGA
Band lengths:
171-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]