BtaINT0095639 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011585 | MST1
Description
macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]
Coordinates
chr22:51084257-51084613:+
Coord C1 exon
chr22:51084257-51084377
Coord A exon
chr22:51084378-51084535
Coord C2 exon
chr22:51084536-51084613
Length
158 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
3' ss Seq
CCTAACCCACATTCCTGCAGGCA
3' ss Score
7.22
Exon sequences
Seq C1 exon
ACCAGGTGCTGTTTGATAAATGTGGCAAGAGAGTGACACGAGTGGACCCGTTGCACTCCAAGCTGCGTGTGGTCGGGGGCCAGCCTGGGAACTCACCCTGGACAGTCAGCTTGCGCAACCG
Seq A exon
GTGAGGCATGACTGCCTGACTCCCCAAGATGGGCCGAAGCTATATCCTCTATGCCTGTGCCAGTAGCAGGGTGGGAACCTGCCCCCATCTGGAGGGGACCTGGAGATGGCAGGTCCAGCCTGGGTCTCAGGACCATTTCCTAACCCACATTCCTGCAG
Seq C2 exon
GCAGGGCCAGCACTTCTGCGGAGGCTCCCTAGTGAAGGAGCAGTGGGTTCTGACTGCCCGGCAGTGTTTCTCCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011585:ENSBTAT00000030663:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.220 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(7.7=41.5)
A:
NA
C2:
PF0008921=Trypsin=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCTGTTTGATAAATGTGGCA
R:
CAGGAGGAGAAACACTGCCG
Band lengths:
195-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]