HsaINT1023630 @ hg38
Intron Retention
Gene
ENSG00000173531 | MST1
Description
macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]
Coordinates
chr3:49685012-49685382:-
Coord C1 exon
chr3:49685262-49685382
Coord A exon
chr3:49685090-49685261
Coord C2 exon
chr3:49685012-49685089
Length
172 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
3' ss Seq
CTAATTCCCCACTCCTCTAGGCA
3' ss Score
7.69
Exon sequences
Seq C1 exon
ACCAGGTGCAGTTTGAGAAGTGTGGCAAGAGGGTGGATCGGCTGGATCAGCGGCGTTCCAAGCTGCGCGTGGTTGGGGGCCATCCGGGCAACTCACCCTGGACAGTCAGCTTGCGGAATCG
Seq A exon
GTGAGGCACAACTGCCTGTCTCCCACAGAGAGGAGCTGAGGTTGTGTCCTCTGTGGTTATCCCACTGGGGGCTGGGAATCTATCCCTGCCCCCAGAGGTCCTAGCCAGAAGATGGCAGGTCTAGCATCTGTCCCAGGAGTCTGTTACCTGTCCTAATTCCCCACTCCTCTAG
Seq C2 exon
GCAGGGCCAGCATTTCTGCGGGGGGTCTCTAGTGAAGGAGCAGTGGATACTGACTGCCCGGCAGTGCTTCTCCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173531:ENST00000449682:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.390 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(7.7=41.5)
A:
PF0008921=Trypsin=PU(2.4=14.8)
C2:
PF0008921=Trypsin=PU(2.4=14.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGTTTGAGAAGTGTGGC
R:
CAGGAGGAGAAGCACTGCCG
Band lengths:
194-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains