RnoINT0094897 @ rn6
Intron Retention
Gene
ENSRNOG00000019680 | Mst1
Description
macrophage stimulating 1 [Source:RGD Symbol;Acc:3114]
Coordinates
chr8:116860834-116861186:+
Coord C1 exon
chr8:116860834-116860942
Coord A exon
chr8:116860943-116861108
Coord C2 exon
chr8:116861109-116861186
Length
166 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
3' ss Seq
CCTAATCTTTATTCCTCTAGACA
3' ss Score
6.67
Exon sequences
Seq C1 exon
TCCAGGTGCAGTTTGAAAAGTGTGGCAAGAGAGTTGACCAGAGTAATAGACTTCGTGTGGTGGGGGGTCATCCTGGGAACTCACCGTGGACAGTCAGCTTGCGGAATCG
Seq A exon
GTGAGGCCTATGTGCTATCTCAAGGAAGGAGCTGAGACTGTAAACTCTGGTTCTATCGGTAGAAGATGGATACCTGGCCCTGTACTAAAAGGTCCTTGTCAAAAATGACAGGTCTACCATGTGTCCTAGGACTCAGTATGGCTTCTCCTAATCTTTATTCCTCTAG
Seq C2 exon
ACAGGGCCAGCATTTCTGTGGGGGTTCCCTAGTGAAGGAGCAGTGGGTACTGACCGCCCGGCAATGCATCTGGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019680:ENSRNOT00000026711:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.243 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(7.7=45.9)
A:
NA
C2:
PF0008921=Trypsin=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGGTGCAGTTTGAAAAGTGT
R:
ATGACCAGATGCATTGCCGG
Band lengths:
186-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]