MmuINT0101357 @ mm10
Intron Retention
Gene
ENSMUSG00000032591 | Mst1
Description
macrophage stimulating 1 (hepatocyte growth factor-like) [Source:MGI Symbol;Acc:MGI:96080]
Coordinates
chr9:108083594-108083941:+
Coord C1 exon
chr9:108083594-108083702
Coord A exon
chr9:108083703-108083863
Coord C2 exon
chr9:108083864-108083941
Length
161 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
3' ss Seq
TCTCATCTTTACTCCTCTAGACA
3' ss Score
8.35
Exon sequences
Seq C1 exon
ACCAGGTGGTGTTTGAAAAGTGTGGCAAGAGAGTTGACAAGAGTAATAAACTTCGTGTGGTGGGAGGCCATCCTGGGAACTCCCCATGGACGGTCAGCTTGCGGAATCG
Seq A exon
GTGAGGCCTAAGCGCTTATCTCAAGGAGTGGAGGCTGGAAACTCTGTGGCTTTATCAGTAGAAGATGGATGCCTGGCCTTGTACCAAAAGGTCCTTGTCAGAAATGACAGTCTAGCATGTGTCCCAGGACTCAGTGTGGCTTCTCATCTTTACTCCTCTAG
Seq C2 exon
ACAGGGCCAGCATTTCTGTGGGGGCTCCCTAGTGAAGGAGCAGTGGGTACTGACTGCCCGGCAATGCATCTGGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032591:ENSMUST00000035211:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.216 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(7.7=45.9)
A:
NA
C2:
PF0008921=Trypsin=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGTGGTGTTTGAAAAGTGTG
R:
CATGACCAGATGCATTGCCGG
Band lengths:
186-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types