GgaINT1018298 @ galGal4
Intron Retention
Gene
ENSGALG00000002722 | MST1
Description
hepatocyte growth factor-like protein precursor [Source:RefSeq peptide;Acc:NP_990544]
Coordinates
chr12:2482079-2482345:+
Coord C1 exon
chr12:2482079-2482190
Coord A exon
chr12:2482191-2482267
Coord C2 exon
chr12:2482268-2482345
Length
77 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
GCCAATCCCCGTGCCTGCAGGGC
3' ss Score
8.24
Exon sequences
Seq C1 exon
ATGCAGTGACATTCGAGGAGTGCGGCCGGCGGGACGAGAGGCTGCAGCAGAAGCAACGTGTGGTGGGTGGGATGCCCGGCAACTCGCCGTGGACCGTCAGCATCCGCAACCG
Seq A exon
GTGAGCGGGCGCCCTGCGTTCCAGCCGTGCCGTGCTGCCAGCCGGGTGCCCACCCCTGCCAATCCCCGTGCCTGCAG
Seq C2 exon
GGCCGGCTTGCACTTCTGCGGTGGGTCGCTGGTGAAGGAGCAGTGGGTGATCAGCACGCAGCAGTGCTTCTCCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002722:ENSGALT00000004292:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.289 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(7.7=44.7)
A:
NA
C2:
PF0008921=Trypsin=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGACATTCGAGGAGTGC
R:
GTGCTGATCACCCACTGCTC
Band lengths:
167-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]