BtaALTA0018796-4/8 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000011585 | MST1
Description
macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]
Coordinates
chr22:51084536-51084902:+
Coord C1 exon
chr22:51084536-51084613
Coord A exon
chr22:51084756-51084879
Coord C2 exon
chr22:51084880-51084902
Length
124 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
TAGCAGAGCTTCTCTCTCAGCCA
3' ss Score
-1.17
Exon sequences
Seq C1 exon
GCAGGGCCAGCACTTCTGCGGAGGCTCCCTAGTGAAGGAGCAGTGGGTTCTGACTGCCCGGCAGTGTTTCTCCTCCTG
Seq A exon
CCATATGTCTCTCGTGGGCTATGAGGTGTGGCTGGGCACCCTGTTCCAGGACCCACAGCCTGGGGAGCCAGACCTGCAGCACATCCCAATGGCCAAGATGGTCTGTGGGCCCTCTGGTTCCCAG
Seq C2 exon
CTTGTTCTGCTCAAGTTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011585-18-23,18-22,18-21,18-20,18-19,18-18,18-17,18-16-4/8
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.080
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(11.8=100)
A:
NA
C2:
PF0008921=Trypsin=FE(22.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGCCAGCACTTCTGC
R:
CTCTCCAACTTGAGCAGAACA
Band lengths:
100-224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development