GgaALTA1020445-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000002722 | MST1
Description
hepatocyte growth factor-like protein precursor [Source:RefSeq peptide;Acc:NP_990544]
Coordinates
chr12:2482268-2482500:+
Coord C1 exon
chr12:2482268-2482345
Coord A exon
chr12:2482410-2482426
Coord C2 exon
chr12:2482427-2482500
Length
17 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
CTGATGGCCCTGTCCTGCAGTGA
3' ss Score
6.81
Exon sequences
Seq C1 exon
GGCCGGCTTGCACTTCTGCGGTGGGTCGCTGGTGAAGGAGCAGTGGGTGATCAGCACGCAGCAGTGCTTCTCCTCCTG
Seq A exon
TGATGCGGACCTGTCAG
Seq C2 exon
GCTATGAGGTGCACCTGGGGACGCTGTTCAAGGACCCCAGCCCCACCGACCCTGACCTGCAGGCCATCCCGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002722-18-19,18-18-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(11.8=100)
A:
NA
C2:
PF0008921=Trypsin=FE(22.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGAGCAGTGGGTGATCA
R:
CTGCAGGTCAGGGTCGGT
Band lengths:
108-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]